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Dataset for manuscript "Equipartition and the temperature of maximum density of TIP4P/2005 water"

  • Asthagiri, Dilipkumar N. | Oak Ridge National Laboratory
  • Pinheiro dos Santos, Thiago J. | Oak Ridge National Laboratory
  • Beck, Thomas L. | Oak Ridge National Laboratory
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Overview

Description

We simulate TIP4P/2005 water in the temperature range of 257 K to 318 K with time-steps 0.25, 0.50, 1.00, 2.00, and 4.00 fs. The density-temperature behavior obtained using 0.25 or 0.50 fs are in excellent agreement with each other but differ from those obtained using time-steps that have been shown earlier to lead to a breakdown of equipartition. The temperature of maximum density (TMD) is 277.15 K with time-step 0.25 or 0.50 fs, but is shifted to progressively lower values for longer time-steps, a trend that holds for different thermostat/barostat combinations. Enhancing the water-water dispersion interaction, as has been recommended for simulating disordered proteins in TIP4P/2005, degrades the description of the liquid-vapor phase envelope. We present a simple physically transparent reasoning to highlight the separation of the time-scales between translational and rotational motion. We also develop a metric, Chi, that we term the equipartition anomaly, to detect equipartition violations in simulations that include molecules that are treated as rigid objects. Calculating Chi is shown to be straightforward and sensitive to equipartition violations. A key takeaway from this study is that using sufficiently short time-steps (less than or equal to 0.5 fs) to preserve equipartition is essential for obtaining meaningful liquid water properties and for producing reliable simulation data, as correct-ensemble sampling is fundamental to ensure reproducibility across codes and simulation alogrithms. The included dataset provides the raw data used in the preparation of the graphs noted in the manuscript.

Funding Resources

DOE Contract Number

AC05-00OR22725

Originating Research Organization

Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Other Contributing Organizations

National Energy Research Scientific Computing (NERSC)

Sponsoring Organization

Advanced Scientific Computing Research (ASCR)

Project Identifier

STF006

Related Resources

Details

DOI

10.13139/OLCF/2998539

Release Date

December 10, 2025

Dataset

Dataset Type

ND Numeric Data

Software

NAMD, AMBER, GROMACS, OpenMM

Acknowledgements

This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Advanced Scientific Computing Research programs in the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725.

Category

  • 74 ATOMIC AND MOLECULAR PHYSICS,
  • 75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY,
  • 36 MATERIALS SCIENCE

Keywords

  • Molecular Dynamics Simulations,
  • statistical mechanics,
  • Thermodynamics