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Structural Models of the Rhodopseudomonas palustris Proteome

    Russell B Davidson | Oak Ridge National Laboratory
    Mark Coletti | Oak Ridge National Laboratory
    Mu Gao | Georgia Tech
    Ada Sedova | Oak Ridge National Laboratory
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Description

This dataset contains the structural models for the primary transcripts of the Rhodopseudomonas palustris proteome. For each protein, the five models inferred from AlphaFold 2 are provided. The largest pTM-scoring model for each protein was energy minimized; this minimized structure as well as its AlphaFold pickle output file are also provided. This set of structures represent an alternate source of models for the R. palustris proteome to those available in the AlphaFold Protein Structure Database.

Funding Information

DOE Contract Number

AC05-00OR22725

Originating Research Organization

Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization

Office of Science (SC);Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Related Works

Details

DOI

https://doi.org/10.13139/ORNLNCCS/1988165

Release Date

July 12, 2023

Subject

59 BASIC BIOLOGICAL SCIENCES, 74 ATOMIC AND MOLECULAR PHYSICS, 97 MATHEMATICS AND COMPUTING

Keywords

Protein Structure Prediction

Dataset

Dataset Type

ND Numeric Data

Software

Python

Other Contract Number(s)

ERKPA05; ERKP917

Cite This Dataset:

Davidson, R., Coletti, M., Gao, M., Sedova, A. (2023). Structural Models of the Rhodopseudomonas palustris Proteome. Oak Ridge National Laboratory. https://doi.org/10.13139/ORNLNCCS/1988165.

Acknowledgements

This work was carried out [in part] at Oak Ridge National Laboratory, managed by UT-Battelle, LLC for the U.S. Department of Energy under contract DE-AC05-00OR22725.