Structural Models of the Rhodopseudomonas palustris Proteome

10.13139/ORNLNCCS/1988165

This dataset contains the structural models for the primary transcripts of the Rhodopseudomonas palustris proteome. For each protein, the five models inferred from AlphaFold 2 are provided. The largest pTM-scoring model for each protein was energy minimized; this minimized structure as well as its AlphaFold pickle output file are also provided. This set of structures represent an alternate source of models for the R. palustris proteome to those available in the AlphaFold Protein Structure Database.

Published: 2023-07-12 11:01:25 Download Dataset

Dataset Properties

Field Value
Authors
  • Davidson, Russell B Oak Ridge National Laboratory
  • Coletti, Mark Oak Ridge National Laboratory
  • Gao, Mu Georgia Tech
  • Sedova, Ada Oak Ridge National Laboratory
Project Identifier BIF135
Dataset Type ND Numeric Data
Subjects
  • 59 BASIC BIOLOGICAL SCIENCES
  • 74 ATOMIC AND MOLECULAR PHYSICS
  • 97 MATHEMATICS AND COMPUTING
Keywords
  • Protein Structure Prediction
Software Needed Python
Originating Organizations Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organizations Office of Science (SC);Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
DOE Contract ERKPA05, ERKP917
Related Identifiers
  • References (DOI) 10.1101/2021.10.04.463034

Acknowledgements

Papers using this dataset are requested to include the following text in their acknowledgements:

*Support for 10.13139/ORNLNCCS/1988165 is provided by the U.S. Department of Energy, project BIF135 under Contract ERKPA05, ERKP917. This research used resources of the Oak Ridge Leadership Computing Facility, which is a DOE Office of Science User Facility.