Structural Models of the Rhodopseudomonas palustris Proteome
- Davidson, Russell B | Oak Ridge National Laboratory
- Coletti, Mark | Oak Ridge National Laboratory
- Gao, Mu | Georgia Tech
- Sedova, Ada | Oak Ridge National Laboratory
Overview
Description
This dataset contains the structural models for the primary transcripts of the Rhodopseudomonas palustris proteome. For each protein, the five models inferred from AlphaFold 2 are provided. The largest pTM-scoring model for each protein was energy minimized; this minimized structure as well as its AlphaFold pickle output file are also provided. This set of structures represent an alternate source of models for the R. palustris proteome to those available in the AlphaFold Protein Structure Database.
Funding resources
DOE contract number
ERKPA05, ERKP917Originating research organization
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)Sponsoring organization
Office of Science (SC);Office of Science (SC), Biological and Environmental Research (BER) (SC-23)Related resources
- References (DOI): https://doi.org/10.1101/2021.10.04.463034
Details
DOI
10.13139/ORNLNCCS/1988165Release date
July 12, 2023Dataset
Dataset type
ND Numeric DataSoftware
PythonAcknowledgements
Users should acknowledge the OLCF in all publications and presentations that speak to work performed on OLCF resources:
This work was carried out [in part] at Oak Ridge National Laboratory, managed by UT-Battelle, LLC for the U.S. Department of Energy under contract DE-AC05-00OR22725.
Category
- 59 BASIC BIOLOGICAL SCIENCES,
- 74 ATOMIC AND MOLECULAR PHYSICS,
- 97 MATHEMATICS AND COMPUTING
Keywords
- Protein Structure Prediction