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Structural Models of the Rhodopseudomonas palustris Proteome

  • Davidson, Russell B | Oak Ridge National Laboratory
  • Coletti, Mark | Oak Ridge National Laboratory
  • Gao, Mu | Georgia Tech
  • Sedova, Ada | Oak Ridge National Laboratory
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Overview

Description

This dataset contains the structural models for the primary transcripts of the Rhodopseudomonas palustris proteome. For each protein, the five models inferred from AlphaFold 2 are provided. The largest pTM-scoring model for each protein was energy minimized; this minimized structure as well as its AlphaFold pickle output file are also provided. This set of structures represent an alternate source of models for the R. palustris proteome to those available in the AlphaFold Protein Structure Database.

Funding resources

DOE contract number

ERKPA05, ERKP917

Originating research organization

Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring organization

Office of Science (SC);Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Related resources

Details

DOI

10.13139/ORNLNCCS/1988165

Release date

July 12, 2023

Dataset

Dataset type

ND Numeric Data

Software

Python

Acknowledgements

Users should acknowledge the OLCF in all publications and presentations that speak to work performed on OLCF resources:

This work was carried out [in part] at Oak Ridge National Laboratory, managed by UT-Battelle, LLC for the U.S. Department of Energy under contract DE-AC05-00OR22725.

Category

  • 59 BASIC BIOLOGICAL SCIENCES,
  • 74 ATOMIC AND MOLECULAR PHYSICS,
  • 97 MATHEMATICS AND COMPUTING

Keywords

  • Protein Structure Prediction