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Structural models and functional annotations for the Sphagnum divinum proteome.

  • Davidson, Russell B | Oak Ridge National Laboratory
  • Coletti, Mark | Oak Ridge National Laboratory
  • Gao, Mu | Georgia Tech
  • Sedova, Ada | Oak Ridge National Laboratory
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Overview

Description

This dataset contains the structural models for the primary transcripts of the Sphagnum divinum proteome. Additionally, for a subset of these proteins, sequence and structural alignment results are provided. This dataset represents the most thorough structural study of a Sphagnum species, also known as peat mosses, by providing three-dimensional atomic resolution structures of the majority of the encoded proteins as well as structural alignment results used in the application of annotating the proteome. References (DOI) AlphaFold v2 Monomer: https://doi.org/10.1038/s41586-021-03819-2. References (DOI) US-align2: https://doi.org/10.1038/s41592-022-01585-1

Funding resources

DOE contract number

ERKPA05, ERKP917

Originating research organization

Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring organization

Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Related resources

Details

DOI

10.13139/ORNLNCCS/1973885

Release date

May 31, 2023

Dataset

Dataset type

ND Numeric Data

Acknowledgements

Users should acknowledge the OLCF in all publications and presentations that speak to work performed on OLCF resources:

This work was carried out [in part] at Oak Ridge National Laboratory, managed by UT-Battelle, LLC for the U.S. Department of Energy under contract DE-AC05-00OR22725.

Category

  • 59 BASIC BIOLOGICAL SCIENCES,
  • 74 ATOMIC AND MOLECULAR PHYSICS,
  • 97 MATHEMATICS AND COMPUTING

Keywords

  • Protein Structure Prediction,
  • Functional Annotation